STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
folE2Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate. (259 aa)    
Predicted Functional Partners:
DvMF_0129
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase, putative.
 
  
 0.932
DvMF_1123
TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 putative 6-pyruvoyl tetrahydrobiopterin synthase.
 
  
 0.932
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.910
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
     
  0.900
DvMF_0965
KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
 
  
  0.846
DvMF_0460
PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase.
     
  0.800
DvMF_0787
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
  0.800
DvMF_1407
PFAM: metal-dependent phosphohydrolase HD sub domain; CHASE2 domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase.
     
  0.800
DvMF_1473
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: dde:Dde_3016 anaerobic ribonucleoside triphosphate reductase.
     
  0.800
DvMF_1819
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; KEGG: dde:Dde_0277 anaerobic ribonucleoside triphosphate reductase.
     
  0.800
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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