Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1326PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; Belongs to the MEMO1 family. (282 aa)    
Predicted Functional Partners:
DvMF_2774
PFAM: AMMECR1 domain protein; KEGG: dde:Dde_2830 AMMECR1.
    0.991
DvMF_0200
PFAM: Radical SAM domain protein; KEGG: dde:Dde_1670 radical SAM domain-containing protein.
     0.927
DvMF_1414
Phosphoglycerate mutase; PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase.
  
     0.611
DvMF_1325
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.
       0.565
cysQ
Inositol monophosphatase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
  
   0.541
DvMF_0904
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
 
     0.449
DvMF_1324
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2959 Fis family transcriptional regulator.
       0.440
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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