Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1343TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease. (337 aa)    
Predicted Functional Partners:
DvMF_1342
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1387 ATPase.
 0.989
DvMF_1918
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein.
 0.985
DvMF_0860
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein.
 0.982
DvMF_1920
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0166 ATPase.
 0.953
DvMF_3151
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1428 ATPase.
 0.953
DvMF_2788
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2763 ATPase.
 0.952
DvMF_0862
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2308 ATPase.
 0.951
DvMF_1571
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein.
 0.948
DvMF_1569
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0184 ATPase.
 
 0.940
DvMF_1344
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_1385 extracellular solute-binding protein.
 0.922
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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