STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (781 aa)    
Predicted Functional Partners:
DvMF_0429
PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein.
 
 
 0.880
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.835
DvMF_2360
TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transport system.
 
  
 0.820
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.803
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
 
  
 0.731
DvMF_2025
KEGG: dde:Dde_0121 hypothetical protein.
  
     0.722
DvMF_0287
SurA domain protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase.
 
  
 0.717
DvMF_3121
KEGG: dde:Dde_1466 putative lipoprotein.
  
     0.711
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
 
     0.710
DvMF_0376
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease, putative.
 
  
 0.709
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.