STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1359PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein. (305 aa)    
Predicted Functional Partners:
DvMF_1807
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein.
  
     0.645
DvMF_0805
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein.
  
     0.613
DvMF_1316
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1135 hypothetical protein.
  
     0.581
DvMF_1822
PFAM: aminotransferase class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II.
      0.486
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
    0.421
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.