STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1384Hypothetical protein; KEGG: dde:Dde_2858 cytochrome c family protein. (192 aa)    
Predicted Functional Partners:
DvMF_2586
KEGG: dde:Dde_0639 hypothetical protein.
  
     0.650
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.603
DvMF_1325
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.
  
     0.598
DvMF_1463
PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein.
  
   
 0.593
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
  
     0.578
DvMF_0508
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein.
  
     0.570
DvMF_0922
Conserved hypothetical protein; KEGG: glo:Glov_3362 glycosyl transferase family 2.
  
     0.565
DvMF_2067
KEGG: dde:Dde_0108 hypothetical protein.
  
    0.555
DvMF_1221
PFAM: Extracellular ligand-binding receptor; KEGG: dde:Dde_0712 putative lipoprotein.
 
   
 0.551
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.549
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.