Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1385KEGG: mbn:Mboo_0041 pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (153 aa)    
Predicted Functional Partners:
DvMF_3004
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mla:Mlab_1007 hypothetical protein.
  
     0.733
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.500
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
       0.471
DvMF_1386
KEGG: dde:Dde_2698 ATP synthase protein I.
       0.470
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
       0.470
DvMF_1384
Hypothetical protein; KEGG: dde:Dde_2858 cytochrome c family protein.
       0.419
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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