Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
DvMF_1387PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein. (144 aa)    
Predicted Functional Partners:
DvMF_1386
KEGG: dde:Dde_2698 ATP synthase protein I.
 
     0.867
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
    0.837
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
 
     0.786
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.774
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.774
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.773
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
  
     0.769
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
  
     0.766
DvMF_0611
KEGG: dde:Dde_1634 hypothetical protein.
  
     0.759
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.757
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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