STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1403PFAM: NLP/P60 protein; KEGG: dde:Dde_2724 NLP/P60 family lipoprotein. (484 aa)    
Predicted Functional Partners:
DvMF_1402
RNA modification enzyme, MiaB family; KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB.
  
    0.639
DvMF_0968
KEGG: dde:Dde_2605 hypothetical protein.
  
     0.602
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
  
 0.570
DvMF_0538
Cytochrome c class I; Natural electron acceptor for a formate dehydrogenase.
  
   0.537
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.494
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
   0.477
DvMF_0539
PFAM: cytochrome c class I; KEGG: dde:Dde_1821 cytochrome c-553.
  
   0.469
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
     0.459
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
  
    0.456
DvMF_2822
KEGG: dde:Dde_0994 hypothetical protein.
  
     0.446
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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