Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1414Phosphoglycerate mutase; PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase. (421 aa)    
Predicted Functional Partners:
pgk
PFAM: phosphoglycerate kinase; KEGG: aeh:Mlg_2842 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.919
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 0.914
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.913
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.911
DvMF_1902
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein.
    
 0.907
DvMF_1780
PFAM: Aldehyde Dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase.
     
 0.903
DvMF_2801
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase.
     
  0.900
DvMF_2202
PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase.
  
 
 0.829
DvMF_0976
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
    
  0.810
DvMF_0364
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
     
 0.807
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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