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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1415KEGG: paa:Paes_0502 hypothetical protein. (103 aa)    
Predicted Functional Partners:
DvMF_0428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1770 ATPase.
   
 0.936
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
  
  
 0.867
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
   
 
 0.835
DvMF_0430
PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein.
  
 
 0.763
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
 
 0.738
msbA
ABC transporter related; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
 0.716
DvMF_2110
KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
 0.701
DvMF_0117
PFAM: ABC-3 protein; KEGG: dde:Dde_2210 cation ABC transporter, permease protein.
     
 0.685
DvMF_0656
PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein.
     
  0.674
DvMF_0657
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transport system.
     
  0.674
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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