STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1416KEGG: eba:ebA616 hypothetical protein. (145 aa)    
Predicted Functional Partners:
DvMF_1417
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY3476 hypothetical protein.
 
     0.751
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
     0.676
DvMF_2764
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.663
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.623
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.600
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.570
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.544
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.537
DvMF_1418
KEGG: tde:TDE0472 hypothetical protein.
       0.534
DvMF_1399
PFAM: Ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein.
  
     0.530
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.