STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1422PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein. (273 aa)    
Predicted Functional Partners:
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
  
     0.648
DvMF_1421
PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase.
 
     0.613
DvMF_3045
KEGG: dde:Dde_1443 hypothetical protein.
  
     0.609
DvMF_0568
KEGG: dde:Dde_1660 DafA protein.
 
     0.587
DvMF_2764
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.539
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.512
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
  
     0.511
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.509
DvMF_2891
KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like.
 
     0.493
DvMF_0003
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein.
 
  
 0.465
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.