STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1427PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein. (441 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.752
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.744
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
  
     0.740
DvMF_0611
KEGG: dde:Dde_1634 hypothetical protein.
  
     0.731
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.724
DvMF_1183
KEGG: dde:Dde_0979 hypothetical protein.
 
    0.703
DvMF_0580
KEGG: dde:Dde_2617 hypothetical protein.
  
   
 0.697
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
 
     0.689
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.682
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
    0.664
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.