Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1433PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing. (431 aa)    
Predicted Functional Partners:
DvMF_0330
PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing.
  
  
 0.976
DvMF_2322
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
 
0.948
DvMF_1315
PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing.
  
  
0.932
DvMF_2633
PFAM: Aldehyde Dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein.
  
 
 0.917
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.872
DvMF_1890
PFAM: iron-containing alcohol dehydrogenase; KEGG: lbl:LBL_1166 alcohol dehyodrogenase.
  
   
 0.698
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
    0.497
DvMF_1432
KEGG: dde:Dde_2972 hypothetical protein.
       0.482
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
    0.467
DvMF_1434
DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_2973 DNA-directed DNA polymerase.
       0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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