Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
rpmERibosomal protein L31; Binds the 23S rRNA. (71 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.990
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.986
rpsP
PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.985
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.985
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.983
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.983
rpmB
PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.983
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.982
rpmG
PFAM: ribosomal protein L33; KEGG: ttj:TTHA0250 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.980
rpsI
PFAM: ribosomal protein S9; KEGG: dde:Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.979
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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