rpmE protein (Desulfovibrio vulgaris Miyazaki)

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rpmE

Ribosomal protein L31; Binds the 23S rRNA. (71 aa)

Predicted Functional Partners:

rpsP

0.990

rpsT

0.988

rplU

0.988

rpmA

0.987

rpsO

0.987

rplS

0.987

rplM

0.986

rpmF

0.986

rpmB

0.986

rplT

0.985

Your Current Organism:

Desulfovibrio vulgaris Miyazaki

NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	DvMF_0969	DvMF_2883	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.990
rplM	rplT	DvMF_0969	DvMF_0981	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.994
rplM	rplU	DvMF_0969	DvMF_1380	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
rplM	rpmA	DvMF_0969	DvMF_1379	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L27; KEGG: dde:Dde_2691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.994
rplM	rpmB	DvMF_0969	DvMF_3105	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.988
rplM	rpmE	DvMF_0969	DvMF_1442	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.986
rplM	rpmF	DvMF_0969	DvMF_3103	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.986
rplM	rpsO	DvMF_0969	DvMF_2509	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.993
rplM	rpsP	DvMF_0969	DvMF_2887	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplM	rpsT	DvMF_0969	DvMF_0292	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.989
rplS	rplM	DvMF_2883	DvMF_0969	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.990
rplS	rplT	DvMF_2883	DvMF_0981	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.991
rplS	rplU	DvMF_2883	DvMF_1380	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplS	rpmA	DvMF_2883	DvMF_1379	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein L27; KEGG: dde:Dde_2691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplS	rpmB	DvMF_2883	DvMF_3105	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.989
rplS	rpmE	DvMF_2883	DvMF_1442	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L31; Binds the 23S rRNA.	0.987
rplS	rpmF	DvMF_2883	DvMF_3103	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.990
rplS	rpsO	DvMF_2883	DvMF_2509	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.989
rplS	rpsP	DvMF_2883	DvMF_2887	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.996
rplS	rpsT	DvMF_2883	DvMF_0292	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.978