Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DvMF_1463PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein. (454 aa)    
Predicted Functional Partners:
DvMF_2369
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3645 TPR repeat-containing protein.
 
 0.889
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
  
  0.876
DvMF_2326
KEGG: dde:Dde_1667 TPR repeat-containing protein.
 
  
  0.837
DvMF_0478
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2117 TPR repeat-containing protein.
 
 0.809
DvMF_3042
PFAM: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like.
  
 
 0.806
DvMF_2499
Cytochrome c class III; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
  
 
 0.801
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.788
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
  
 0.788
DvMF_2283
PFAM: TPR repeat-containing protein; KEGG: dde:Dde_0357 TPR repeat-containing protein.
 
 
 
 0.779
DvMF_0871
KEGG: dde:Dde_2351 hypothetical protein.
 
 0.773
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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