Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1465KEGG: dde:Dde_3008 hypothetical protein. (284 aa)    
Predicted Functional Partners:
DvMF_0527
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein.
 
  
 0.954
DvMF_0528
PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; Belongs to the LarC family.
  
 0.939
DvMF_1997
KEGG: mta:Moth_1926 hypothetical protein.
 
  
 0.925
DvMF_3139
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalt transport protein CbiM.
  
    0.686
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
    0.566
DvMF_0593
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
    0.563
DvMF_1870
PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein.
 
     0.563
DvMF_2463
KEGG: dde:Dde_0554 hypothetical protein.
 
     0.508
xseB
Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
   
    0.488
DvMF_0529
PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase.
 
    0.469
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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