Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1484PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (739 aa)    
Predicted Functional Partners:
DvMF_2895
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative.
  
 
 0.831
DvMF_2672
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein.
 
 0.807
DvMF_0644
KEGG: sfu:Sfum_0037 formate dehydrogenase, beta subunit, putative.
 
 0.804
DvMF_1216
KEGG: dde:Dde_0718 formate dehydrogenase, beta subunit, putative.
 
 0.802
DvMF_2534
KEGG: dde:Dde_3514 formate dehydrogenase beta subunit.
 
 0.802
DvMF_0932
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 putative hydrogenase protein.
 0.801
DvMF_0647
KEGG: dde:Dde_3514 formate dehydrogenase beta subunit.
 
 0.795
DvMF_0319
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein.
 
 0.791
DvMF_1611
TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B.
 
 0.788
DvMF_1693
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein.
 
 0.786
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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