Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1495PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein. (2478 aa)    
Predicted Functional Partners:
DvMF_1355
Hypothetical protein; KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein.
 
 0.926
DvMF_1160
Cyclic nucleotide-binding protein; KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.821
DvMF_1159
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD.
 
  
 0.813
DvMF_1494
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.
 
  
 0.762
DvMF_0371
PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein.
   
 
 0.744
DvMF_1158
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein.
 
   
 0.726
DvMF_1690
PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transport protein, putative.
  
  
 0.705
DvMF_1354
PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein.
 
 
 0.681
DvMF_0689
TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transport protein.
     
 0.663
DvMF_0221
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein.
   
 0.648
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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