STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1497PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (387 aa)    
Predicted Functional Partners:
DvMF_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_3105 ATPase.
 
 
 0.999
DvMF_1499
PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative.
 
 
 0.998
DvMF_1496
PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like.
       0.796
DvMF_1500
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase.
  
  
 0.616
DvMF_1588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
  
  
 0.602
DvMF_2767
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
  
  
 0.594
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
  
  
 0.542
DvMF_2584
KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein; Belongs to the PEP-utilizing enzyme family.
     
 0.469
DvMF_2364
TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein.
  
  
 0.450
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.446
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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