STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1499PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter, periplasmic iron compount-binding protein, putative. (382 aa)    
Predicted Functional Partners:
DvMF_1497
PFAM: transport system permease protein; KEGG: dde:Dde_3104 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.998
DvMF_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_3105 ATPase.
 
 
 0.997
DvMF_1496
PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like.
 
   
 0.817
DvMF_1500
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase.
     
 0.643
DvMF_2767
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
     
 0.597
DvMF_1588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB.
   
  
 0.568
DvMF_2348
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
  
  
 0.554
DvMF_1175
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Protein of unknown function methylase putative; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating).
     
 0.552
DvMF_0476
PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent).
     
 0.538
DvMF_3095
TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase.
     
 0.536
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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