STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1502PFAM: protein of unknown function DUF330; KEGG: rsq:Rsph17025_1717 ABC-type uncharacterized transport system auxiliary component-like protein. (247 aa)    
Predicted Functional Partners:
DvMF_1503
PFAM: Mammalian cell entry related domain protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein.
 
   0.981
DvMF_1504
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pla:Plav_2513 ABC transporter related.
 
    0.958
DvMF_1505
PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140.
 
  
 0.932
DvMF_0040
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 hypothetical protein.
  
   0.673
DvMF_0854
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein.
  
   0.590
DvMF_2212
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.518
DvMF_2285
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.518
DvMF_2825
PFAM: protein of unknown function DUF583; KEGG: dde:Dde_0991 hypothetical protein.
   
    0.478
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.440
DvMF_1501
PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer.
       0.425
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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