Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_1507PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: par:Psyc_1134 hypothetical protein. (267 aa)    
Predicted Functional Partners:
DvMF_2793
PFAM: Pirin domain protein; KEGG: dps:DP1287 pirin; Belongs to the pirin family.
 
  
 0.714
DvMF_1898
PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.592
DvMF_1508
Hypothetical protein.
       0.470
DvMF_1506
Hypothetical protein.
       0.431
DvMF_3095
TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase.
     
 0.418
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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