STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1520PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit; Belongs to the complex I 20 kDa subunit family. (157 aa)    
Predicted Functional Partners:
DvMF_1522
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7.
 
 0.994
DvMF_1519
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H).
 
 
 0.991
DvMF_3189
NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit.
 
 0.988
DvMF_3193
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit.
 
 
 0.971
DvMF_1523
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
 
 
 0.959
nuoD
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
 
     0.944
DvMF_1518
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tte:TTE0123 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit.
 
  
 0.922
DvMF_3191
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_1829 carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit.
 
 0.922
DvMF_3194
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit.
 
 
 0.895
DvMF_1860
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.849
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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