STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1527KEGG: dde:Dde_0591 hypothetical protein. (284 aa)    
Predicted Functional Partners:
DvMF_2599
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dde:Dde_0655 AP endonuclease.
  
     0.535
DvMF_2961
KEGG: dde:Dde_1345 hypothetical protein.
  
     0.491
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.474
DvMF_2530
KEGG: dde:Dde_0292 hypothetical protein.
  
     0.470
DvMF_0506
PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like.
  
     0.462
DvMF_2532
PFAM: cytochrome c class III; KEGG: dde:Dde_0561 cytochrome c family protein.
  
     0.453
DvMF_2879
PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component, putative.
  
     0.428
DvMF_2639
KEGG: dde:Dde_1333 hypothetical protein.
  
     0.423
DvMF_0902
Hypothetical protein.
  
     0.422
DvMF_1386
KEGG: dde:Dde_2698 ATP synthase protein I.
  
     0.421
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.