STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1546KEGG: dde:Dde_0564 hypothetical protein. (201 aa)    
Predicted Functional Partners:
DvMF_2283
PFAM: TPR repeat-containing protein; KEGG: dde:Dde_0357 TPR repeat-containing protein.
  
    0.896
DvMF_1547
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein.
 
     0.854
DvMF_2525
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.
 
   0.849
DvMF_0244
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   0.838
DvMF_1545
KEGG: dde:Dde_0563 hypothetical protein.
  
    0.808
DvMF_2950
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   0.808
DvMF_1474
PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein.
 
   0.801
DvMF_1620
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.
 
   0.795
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
     0.786
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
     0.786
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.