Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1546KEGG: dde:Dde_0564 hypothetical protein. (201 aa)    
Predicted Functional Partners:
DvMF_2283
PFAM: TPR repeat-containing protein; KEGG: dde:Dde_0357 TPR repeat-containing protein.
  
    0.929
DvMF_2950
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   0.901
DvMF_0244
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   0.863
DvMF_1547
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein.
 
     0.857
csrA
Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
   
   0.841
DvMF_2525
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL, putative.
 
   0.837
DvMF_1545
KEGG: dde:Dde_0563 hypothetical protein.
  
    0.834
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
 
   0.822
DvMF_0299
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein.
 
     0.787
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
     0.786
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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