STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1547PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein. (585 aa)    
Predicted Functional Partners:
DvMF_3035
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein.
 
  
 0.860
DvMF_1546
KEGG: dde:Dde_0564 hypothetical protein.
 
     0.854
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
 
   0.799
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
 
   0.798
DvMF_2229
KEGG: dde:Dde_0075 hypothetical protein.
 
  
 0.769
DvMF_0300
KEGG: dde:Dde_2021 CgeB family protein.
 
   0.746
DvMF_2790
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1667 TPR repeat-containing protein.
  
     0.731
DvMF_2044
PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase.
 
  
 0.726
DvMF_1136
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein.
  
     0.723
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
 
   0.717
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.