Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1550KEGG: dde:Dde_0521 hypothetical protein. (260 aa)    
Predicted Functional Partners:
DvMF_1552
KEGG: dde:Dde_0524 hypothetical protein.
 
     0.845
DvMF_1549
PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein.
       0.814
DvMF_1551
KEGG: dde:Dde_0523 hypothetical protein.
 
     0.788
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
 
     0.786
DvMF_0902
Hypothetical protein.
  
     0.773
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
  
     0.769
DvMF_0356
PFAM: Tetratricopeptide TPR_4; KEGG: dde:Dde_1975 hypothetical protein.
  
     0.760
DvMF_1219
KEGG: dde:Dde_0714 transposase, putative.
  
     0.755
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.754
DvMF_3045
KEGG: dde:Dde_1443 hypothetical protein.
  
     0.754
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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