STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1551KEGG: dde:Dde_0523 hypothetical protein. (232 aa)    
Predicted Functional Partners:
DvMF_1552
KEGG: dde:Dde_0524 hypothetical protein.
 
     0.810
DvMF_1550
KEGG: dde:Dde_0521 hypothetical protein.
 
     0.787
DvMF_0004
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.
  
     0.766
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.728
DvMF_1322
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
  
     0.715
DvMF_0206
KEGG: dde:Dde_1679 hypothetical protein.
  
     0.714
DvMF_2229
KEGG: dde:Dde_0075 hypothetical protein.
  
     0.711
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
 
     0.697
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.695
DvMF_2777
KEGG: dde:Dde_2827 hypothetical protein.
  
     0.689
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.