STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1555PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B. (77 aa)    
Predicted Functional Partners:
DvMF_1554
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
 
 0.987
DvMF_1553
KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
 
 
 0.948
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
 
     0.786
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
 
     0.769
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
  
     0.754
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
   
 0.701
DvMF_0885
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like.
 
 
 
 0.695
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
 
     0.686
DvMF_2556
KEGG: dde:Dde_3708 hypothetical protein.
  
   
 0.672
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.667
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.