Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1555PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B. (77 aa)    
Predicted Functional Partners:
DvMF_1554
KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
 
 0.995
DvMF_1553
KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
 
 
 0.964
DvMF_2119
KEGG: dde:Dde_3774 hypothetical protein.
 
     0.790
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
 
     0.771
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
  
     0.754
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
   
 0.709
DvMF_2834
KEGG: dde:Dde_1143 hypothetical protein.
 
     0.687
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.667
DvMF_2556
KEGG: dde:Dde_3708 hypothetical protein.
  
   
 0.660
DvMF_2120
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin serves as a carrier for pyruvate dehydrogenase.
 
  
 0.650
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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