Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1558PFAM: regulatory protein MarR; KEGG: pmy:Pmen_1814 transcriptional regulator, MarR family. (149 aa)    
Predicted Functional Partners:
DvMF_1559
PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters.
 
    0.633
DvMF_1429
PFAM: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator.
  
     0.500
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
 
   
 0.498
DvMF_1557
KEGG: dde:Dde_2627 hypothetical protein.
       0.495
DvMF_2265
PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator.
  
     0.491
DvMF_2167
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein.
  
     0.446
DvMF_2155
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter.
  
     0.424
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.408
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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