Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1577KEGG: dde:Dde_3025 hypothetical protein. (78 aa)    
Predicted Functional Partners:
DvMF_2817
KEGG: dde:Dde_1000 hypothetical protein.
  
     0.725
DvMF_0847
KEGG: dde:Dde_2292 hypothetical protein.
  
     0.492
DvMF_2896
KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative.
  
     0.481
DvMF_1576
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 transcriptional regulator, AraC family.
       0.462
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
  
     0.450
DvMF_1152
PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein.
  
     0.445
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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