Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
DvMF_1582PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transport system, permeasecomponent. (313 aa)    
Predicted Functional Partners:
DvMF_1581
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
DvMF_1583
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter, ATP-binding protein.
 
 0.989
DvMF_1584
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_0310 ABC transporter related.
 
 0.988
DvMF_2751
PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.961
DvMF_2753
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0261 ATPase.
 
 0.958
DvMF_1481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0890 ABC transporter related.
 
 0.956
DvMF_1163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3102 ABC transporter related.
 
 0.955
DvMF_2754
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0262 ATPase.
 
 0.950
DvMF_2610
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0609 ATPase.
 
 0.947
DvMF_2608
PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.946
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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