Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1627TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein. (538 aa)    
Predicted Functional Partners:
DvMF_1628
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.972
DvMF_0036
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 0.949
DvMF_0035
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_3921 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.948
DvMF_2164
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cvi:CV_0435 multidrug efflux membrane permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.948
DvMF_2163
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D.
 0.947
DvMF_1100
PFAM: secretion protein HlyD family protein; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A.
 
 0.945
DvMF_1516
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_1651 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.936
DvMF_2157
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_3037 secretion protein HlyD.
 
 0.878
DvMF_1515
PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.854
DvMF_1630
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
 
 0.845
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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