STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1629PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1809 ABC transporter, ATP-binding protein. (315 aa)    
Predicted Functional Partners:
DvMF_1630
PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease protein, putative.
 
 
 0.942
DvMF_2954
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transport system, permease component.
 
 0.912
DvMF_2953
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter, permease protein.
 
 0.909
msbA
ABC transporter related; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
0.891
DvMF_0698
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.
 
 
 0.807
DvMF_1628
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA1810 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.803
DvMF_0628
PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter, permease protein.
 
 
 0.762
DvMF_0629
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214.
 
 
 0.715
DvMF_2063
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214.
  
 
 0.713
DvMF_2994
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein.
  
 
 0.713
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.