Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_1640KEGG: sfu:Sfum_1892 hypothetical protein. (119 aa)    
Predicted Functional Partners:
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
 
 0.834
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
  
    0.800
DvMF_1641
Hypothetical protein; KEGG: sfu:Sfum_1891 phage-related protein-like.
  
  
 0.694
DvMF_1638
KEGG: nmu:Nmul_A1449 hypothetical protein.
  
 
 0.677
DvMF_1636
KEGG: nmu:Nmul_A1447 hypothetical protein.
  
    0.666
DvMF_1637
KEGG: nmu:Nmul_A1448 hypothetical protein.
       0.651
DvMF_2033
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
  
 
 0.592
DvMF_1642
Hypothetical protein.
       0.558
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.531
DvMF_2664
SMART: PDZ/DHR/GLGF domain protein; KEGG: mag:amb4535 Zn-dependent protease with chaperone function.
    
 
 0.437
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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