Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1641Hypothetical protein; KEGG: sfu:Sfum_1891 phage-related protein-like. (301 aa)    
Predicted Functional Partners:
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
 
 0.994
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
  
 
 0.975
DvMF_1642
Hypothetical protein.
       0.773
DvMF_1640
KEGG: sfu:Sfum_1892 hypothetical protein.
  
  
 0.694
DvMF_2328
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein.
   
    0.631
DvMF_1636
KEGG: nmu:Nmul_A1447 hypothetical protein.
  
    0.620
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
  
   0.605
DvMF_1644
KEGG: pfl:PFL_3748 hypothetical protein.
       0.543
DvMF_2646
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like.
   
    0.499
DvMF_1637
KEGG: nmu:Nmul_A1448 hypothetical protein.
       0.477
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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