STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1650KEGG: rsh:Rsph17029_3324 hypothetical protein. (122 aa)    
Predicted Functional Partners:
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
  
    0.808
DvMF_1652
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor, putative.
       0.805
DvMF_1649
KEGG: bph:Bphy_7150 hypothetical protein.
       0.778
DvMF_1651
Hypothetical protein.
       0.773
DvMF_1654
Hypothetical protein.
       0.773
DvMF_1648
KEGG: hch:HCH_04547 hypothetical protein.
       0.751
DvMF_1655
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein.
       0.682
DvMF_1657
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.
  
    0.675
DvMF_1656
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease, HK97 family.
       0.671
DvMF_1658
PFAM: Terminase; KEGG: bph:Bphy_7140 terminase.
       0.671
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.