STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1657TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family. (408 aa)    
Predicted Functional Partners:
DvMF_1655
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein.
 
 
 0.984
DvMF_1653
KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8.
 
 
 0.971
DvMF_1652
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor, putative.
 
 
 0.967
DvMF_1659
KEGG: sew:SeSA_A4461 putative phage terminase, small subunit, P27 family.
 
  
 0.963
DvMF_1658
PFAM: Terminase; KEGG: bph:Bphy_7140 terminase.
 
   
 0.961
DvMF_1656
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease, HK97 family.
 
   
 0.954
DvMF_1660
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bpm:BURPS1710b_1677 GP70.
 
  
 0.944
DvMF_1649
KEGG: bph:Bphy_7150 hypothetical protein.
  
 
 0.868
DvMF_1355
Hypothetical protein; KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein.
 
 
 
 0.687
DvMF_1650
KEGG: rsh:Rsph17029_3324 hypothetical protein.
  
    0.675
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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