STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1664KEGG: mag:amb1193 hypothetical protein. (135 aa)    
Predicted Functional Partners:
DvMF_1661
Hypothetical protein.
       0.773
DvMF_1662
KEGG: hch:HCH_02889 hypothetical protein.
       0.773
DvMF_1663
KEGG: psp:PSPPH_1890 hypothetical protein.
       0.773
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
 
     0.654
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
  
     0.649
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
  
     0.642
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
 
     0.615
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
 
     0.601
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
 
     0.574
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein.
  
  
 0.550
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.