STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1693PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein. (591 aa)    
Predicted Functional Partners:
DvMF_0445
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein.
 
   
 0.771
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
 
 
 0.758
DvMF_2689
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.751
DvMF_1695
PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561.
 
  
 0.750
DvMF_1694
KEGG: sfu:Sfum_0090 cytochrome c family protein.
 
    0.747
DvMF_2596
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3.
 
 0.744
DvMF_3187
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A1426 4Fe-4S ferredoxin, iron-sulfur binding.
 
   
 0.731
DvMF_2531
KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like.
 
 
 0.704
DvMF_0066
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit, putative.
  
 
 0.702
DvMF_2690
KEGG: dde:Dde_2932 hypothetical protein.
 
 
 
 0.686
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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