Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1700TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase. (591 aa)    
Predicted Functional Partners:
DvMF_2755
PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase.
 
 
 
 0.846
DvMF_0775
PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein.
  
 
 
 0.788
DvMF_2543
PFAM: response regulator receiver; KEGG: lch:Lcho_0734 response regulator receiver protein.
  
 
 
 0.788
DvMF_1988
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
  
   0.768
DvMF_1991
PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein.
  
   0.761
DvMF_2334
PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein.
  
   0.761
DvMF_0882
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dde:Dde_2387 two component transcriptional regulator.
  
 
 
 0.754
DvMF_1772
PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein.
  
   0.751
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
  
   0.749
DvMF_1223
Anti-sigma-factor antagonist; PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein.
 
   0.740
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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