Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1733PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (549 aa)    
Predicted Functional Partners:
DvMF_1732
KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 0.993
hydA
Hydrogenase (NiFe) small subunit HydA; Catalyzes the reversible oxidoreduction of molecular hydrogen, in conjunction with a specific electron acceptor, cytochrome c3.
 
 0.975
hysA
KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 0.975
DvMF_2895
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit, putative.
  
 
 0.949
DvMF_0269
TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein.
 
  
 0.864
DvMF_0272
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein.
 
  
 0.863
DvMF_0325
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit, putative.
  
 
 0.816
DvMF_2596
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3.
  
 
 0.801
DvMF_2687
PFAM: Polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
 
 0.801
DvMF_1868
PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein.
  
 
 0.799
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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