STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1735PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein. (324 aa)    
Predicted Functional Partners:
DvMF_2272
KEGG: dde:Dde_0372 hypothetical protein.
 
   
 0.715
DvMF_1985
KEGG: sfu:Sfum_0645 hypothetical protein.
  
     0.652
DvMF_2120
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin serves as a carrier for pyruvate dehydrogenase.
  
     0.607
DvMF_1984
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81.
  
     0.594
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
  
    0.542
DvMF_1736
PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase.
 
     0.534
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.532
DvMF_1555
PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B.
 
     0.529
DvMF_2118
KEGG: dde:Dde_3773 hypothetical protein.
 
     0.490
DvMF_0247
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.484
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.