Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1765KEGG: afu:AF1562 hypothetical protein. (139 aa)    
Predicted Functional Partners:
DvMF_1764
PFAM: protein of unknown function DUF81; KEGG: afu:AF1561 hypothetical protein.
 
    0.948
DvMF_2103
PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein.
 
    0.680
DvMF_2342
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81.
 
    0.659
DvMF_1768
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase.
 
     0.645
DvMF_1766
Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase.
       0.630
DvMF_1767
KEGG: dde:Dde_0319 hypothetical protein.
       0.630
DvMF_2104
KEGG: tbd:Tbd_2612 hypothetical protein.
  
     0.628
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
       0.585
DvMF_1984
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81.
 
    0.583
DvMF_1985
KEGG: sfu:Sfum_0645 hypothetical protein.
  
     0.571
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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