STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1767KEGG: dde:Dde_0319 hypothetical protein. (115 aa)    
Predicted Functional Partners:
DvMF_1768
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase.
 
    0.936
DvMF_1770
KEGG: sfu:Sfum_0655 hypothetical protein.
 
     0.886
DvMF_1766
Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase.
 
    0.834
DvMF_1769
PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein.
       0.791
DvMF_0004
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.
  
   
 0.655
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.643
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
  
     0.617
DvMF_1765
KEGG: afu:AF1562 hypothetical protein.
       0.614
DvMF_1551
KEGG: dde:Dde_0523 hypothetical protein.
  
     0.613
DvMF_2707
KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
   
 0.610
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.