STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1784PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 unknown conserved protein. (365 aa)    
Predicted Functional Partners:
DvMF_0579
KEGG: dde:Dde_2616 hypothetical protein.
  
     0.477
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
 
   
 0.462
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
  
     0.424
DvMF_0659
Hypothetical protein; KEGG: mka:MK0390 HD-superfamily hydrolase.
  
     0.413
DvMF_1783
PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_3213 histone-like DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
    0.405
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.