STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1798Sigma54 specific transcriptional acivator, PspF, Fis family; KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (434 aa)    
Predicted Functional Partners:
DvMF_1799
TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A.
 
 
 
 0.780
DvMF_0427
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.725
DvMF_1801
TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C, PspC.
 
     0.601
DvMF_1797
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
  
    0.587
DvMF_1089
KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.546
DvMF_0237
Putative CheA signal transduction histidine kinase; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 CheA signal transduction histidine kinase.
  
 
 0.496
DvMF_2273
KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.484
DvMF_0557
KEGG: dde:Dde_1800 flagellar synthesis regulator FleN, putative.
  
 
 0.464
DvMF_2012
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN.
  
 
 0.464
DvMF_2013
KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF, putative.
  
  
 0.453
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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