Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1803PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein. (234 aa)    
Predicted Functional Partners:
DvMF_1804
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sat:SYN_00591 thioredoxin peroxidase.
 
     0.866
DvMF_1805
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein.
 
  
 0.683
DvMF_1802
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein.
 
     0.574
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.560
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase.
  
  
 0.542
DvMF_2328
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein.
  
    0.466
DvMF_1172
PFAM: Rhodanese domain protein; KEGG: dde:Dde_0806 rhodanese-like protein.
 
  
 0.447
DvMF_1173
KEGG: dde:Dde_0805 hypothetical protein.
 
   
 0.447
DvMF_1322
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
  
     0.447
DvMF_2191
KEGG: dde:Dde_0600 hypothetical protein.
  
     0.447
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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